Notebook python

A few comments on the new "pipe" output flag in Snakemake.

In which I briefly motivate the utility of generator functions and demonstrate that they can be nested to create a data processing stream.

Roundup of links from the last week's worth of interesting reads.

Roundup of links from the last week's worth of interesting reads.

The UNIX shell is an indispensible tool for project organization and data management in bioinformatics. I spend a lot of time in the shell, and having picked up on a lot of time-saving techniques over the years it might just be my favorite computing environment.

The shell has its limitations, however. Piping, the very feature that gives the shell its …

I recently sketched out some notes on random placement of genomic intervals. Here I show a more concrete implementation

I've been looking at statistics of gene spacing, but as of yet have not compared these to benchmarks of "randomly" distributed genes. Here I sketch out a few rough notes on the topic.