Psst! I've posted some details about my notebook setup here.

Composing generator functions in Python

In which I briefly motivate the utility of generator functions and demonstrate that they can be nested to create a data processing stream.

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Reading roundup

Roundup of links from the last week's worth of interesting reads.

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Reading roundup

Roundup of links from the last week's worth of interesting reads.

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Shell pipelines in Python

The UNIX shell is an indispensible tool for project organization and data management in bioinformatics. I spend a lot of time in the shell, and having picked up on a lot of time-saving techniques over the years it might just be my favorite computing environment.

The shell has its limitations, however. Piping, the very feature that gives the shell its ...

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Random gene distribution: follow up

I recently sketched out some notes on random placement of genomic intervals. Here I show a more concrete implementation

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Some notes on random gene distribution

I've been looking at statistics of gene spacing, but as of yet have not compared these to benchmarks of "randomly" distributed genes. Here I sketch out a few rough notes on the topic.

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