Psst! I've posted some details about my notebook setup here.

Reading roundup

Roundup of links from the last week's worth of interesting reads.

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Reading roundup

Roundup of links to interesting reads from the last couple of weeks.

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Shell pipelines in Python

The UNIX shell is an indispensible tool for project organization and data management in bioinformatics. I spend a lot of time in the shell, and having picked up on a lot of time-saving techniques over the years it might just be my favorite computing environment.

The shell has its limitations, however. Piping, the very feature that gives the shell its ...

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Filter stderr while piping in UNIX

Permalink: 2015-12-14 by Daniel S. Standage in blog tags: shell

Nifty trick for filtering stderr in the middle of a shell pipeline.

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Reading roundup

Roundup of links to interesting reads from the last couple of weeks.

more…