Notebook bash

In which I explore read alignments in SAM format and discuss the pros and cons of various approaches to distinguishing perfect matches from imperfect matches.

I created a table for my iLocus paper tonight, and wanted to capture the commands used to populate it while everything is still fresh in my mind.

Some notes on my data forensics to determine whether there are any differences between the RefSeq Arabidopsis annotation and TAIR10.

We submitted a genome paper to Genome Biology over the weekend. I'm going through our repository and tidying things up, and I realized I have not had a chance to record my notes on several of the supplemental tables providing a comparison of genome features across seven species. I'll go ahead and do so here.