Integrated genome analysis toolkit

The AEGeAn Toolkit is designed for the Analysis and Evaluation of Genome Annotations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures. AEGeAn is free to use and is released under an unrestrictive open source license.


Preliminary documentation for the AEGeAn Toolkit, including download and installation instructions, API documentation, and program guides is available at


Daniel S. Standage and Volker P. Brendel (2012) ParsEval: parallel comparison and analysis of gene structure annotations. BMC Bioinformatics, 13:187, doi:10.1186/1471-2105-13-187.


If you have any questions or encounter any issues running the software, please use AEGeAn's issue tracker on GitHub. We receive an email notification with each issue submitted and will do our best to respond quickly.

© 2010-2016 Brendel Group, Indiana University | Template design by Andreas Viklund